Repeated sequences and the sites of genome rearrangements in bacteriophages of Lactobacillus delbrueckii subsp. lactis
Identifieur interne : 001A36 ( Istex/Checkpoint ); précédent : 001A35; suivant : 001A37Repeated sequences and the sites of genome rearrangements in bacteriophages of Lactobacillus delbrueckii subsp. lactis
Auteurs : P. Forsman [Finlande] ; T. Alatossava [Finlande]Source :
- Archives of Virology [ 0304-8608 ] ; 1994-03-01.
English descriptors
- Teeft :
- Alatossava, Bacteriophage, Codon, Database, Delbrueckii, Delbrueckii subsp, Forsman, Genome, Genome rearrangements, Hindiii, Hindiii fragment, Homology, Hybridization, Insertion, Lactic, Lactic acid bacteria, Lactis, Lactobacillus, Lactobacillus delbrueckii subsp, Modular evolution, Nucleotide, Phage, Putative, Reading frames, Rearrangement, Repi, Repii, Repjcl, Sequence features, Sequence homology, Sequencing, Subsp, Target sequence, Third nucleotide position, Total phage, Transposable, Transposable elements.
Abstract
Summary: We have sequenced the KIS-element, a 1.5 kb insertion segment present in the genome ofLactobacillus delbrueckii subsp.lactis phage LL-K, but absent from its close relative, phage LL-H. The KIS-element showed some sequence features of a transposable element: it was flanked by direct repeats of a 20 nt long sequence which was in the genome of LL-H as a target sequence. The KIS-element contained two putative ORFs. The C-terminal part of ORF333 consisted of clusters of direct repeats, capable of coding Lys/Arg-Gly-Asp motifs, which are known to be able to bind to glycoproteins. A homologous counterpart of the KIS-element was also found in the genome of prolate-headedL. delbrueckii subsp.lactis phage JCL1032, even though the phage JCL1032 is not a close relative of phage LL-K. The nucleotide sequence comparison between KIS-element and its homologous counterpart in JCL1032 showed that there have occurred several genome rearrangements at the repeat clusters.
Url:
DOI: 10.1007/BF01311172
Affiliations:
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<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Repeated sequences and the sites of genome rearrangements in bacteriophages of Lactobacillus delbrueckii subsp. lactis</title><author><name sortKey="Forsman, P" sort="Forsman, P" uniqKey="Forsman P" first="P." last="Forsman">P. Forsman</name></author><author><name sortKey="Alatossava, T" sort="Alatossava, T" uniqKey="Alatossava T" first="T." last="Alatossava">T. Alatossava</name></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:89A9F61F8C88F285551F3D413D0A2A001065A03C</idno><date when="1994" year="1994">1994</date><idno type="doi">10.1007/BF01311172</idno><idno type="url">https://api.istex.fr/ark:/67375/1BB-JQ42HMCW-L/fulltext.pdf</idno><idno type="wicri:Area/Istex/Corpus">001124</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">001124</idno><idno type="wicri:Area/Istex/Curation">001124</idno><idno type="wicri:Area/Istex/Checkpoint">001A36</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">001A36</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Repeated sequences and the sites of genome rearrangements in bacteriophages of Lactobacillus delbrueckii subsp. lactis</title><author><name sortKey="Forsman, P" sort="Forsman, P" uniqKey="Forsman P" first="P." last="Forsman">P. Forsman</name><affiliation wicri:level="1"><country xml:lang="fr">Finlande</country><wicri:regionArea>Department of Genetics, University of Oulu, Oulu</wicri:regionArea><wicri:noRegion>Oulu</wicri:noRegion></affiliation></author><author><name sortKey="Alatossava, T" sort="Alatossava, T" uniqKey="Alatossava T" first="T." last="Alatossava">T. Alatossava</name><affiliation wicri:level="1"><country xml:lang="fr">Finlande</country><wicri:regionArea>Department of Genetics, University of Oulu, Oulu</wicri:regionArea><wicri:noRegion>Oulu</wicri:noRegion></affiliation></author></analytic><monogr></monogr><series><title level="j">Archives of Virology</title><title level="j" type="abbrev">Archives of Virology</title><idno type="ISSN">0304-8608</idno><idno type="eISSN">1432-8798</idno><imprint><publisher>Springer-Verlag</publisher><pubPlace>Vienna</pubPlace><date type="published" when="1994-03-01">1994-03-01</date><biblScope unit="volume">137</biblScope><biblScope unit="issue">1-2</biblScope><biblScope unit="page" from="43">43</biblScope><biblScope unit="page" to="54">54</biblScope></imprint><idno type="ISSN">0304-8608</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0304-8608</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="Teeft" xml:lang="en"><term>Alatossava</term><term>Bacteriophage</term><term>Codon</term><term>Database</term><term>Delbrueckii</term><term>Delbrueckii subsp</term><term>Forsman</term><term>Genome</term><term>Genome rearrangements</term><term>Hindiii</term><term>Hindiii fragment</term><term>Homology</term><term>Hybridization</term><term>Insertion</term><term>Lactic</term><term>Lactic acid bacteria</term><term>Lactis</term><term>Lactobacillus</term><term>Lactobacillus delbrueckii subsp</term><term>Modular evolution</term><term>Nucleotide</term><term>Phage</term><term>Putative</term><term>Reading frames</term><term>Rearrangement</term><term>Repi</term><term>Repii</term><term>Repjcl</term><term>Sequence features</term><term>Sequence homology</term><term>Sequencing</term><term>Subsp</term><term>Target sequence</term><term>Third nucleotide position</term><term>Total phage</term><term>Transposable</term><term>Transposable elements</term></keywords></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Summary: We have sequenced the KIS-element, a 1.5 kb insertion segment present in the genome ofLactobacillus delbrueckii subsp.lactis phage LL-K, but absent from its close relative, phage LL-H. The KIS-element showed some sequence features of a transposable element: it was flanked by direct repeats of a 20 nt long sequence which was in the genome of LL-H as a target sequence. The KIS-element contained two putative ORFs. The C-terminal part of ORF333 consisted of clusters of direct repeats, capable of coding Lys/Arg-Gly-Asp motifs, which are known to be able to bind to glycoproteins. A homologous counterpart of the KIS-element was also found in the genome of prolate-headedL. delbrueckii subsp.lactis phage JCL1032, even though the phage JCL1032 is not a close relative of phage LL-K. The nucleotide sequence comparison between KIS-element and its homologous counterpart in JCL1032 showed that there have occurred several genome rearrangements at the repeat clusters.</div></front></TEI><affiliations><list><country><li>Finlande</li></country></list><tree><country name="Finlande"><noRegion><name sortKey="Forsman, P" sort="Forsman, P" uniqKey="Forsman P" first="P." last="Forsman">P. Forsman</name></noRegion><name sortKey="Alatossava, T" sort="Alatossava, T" uniqKey="Alatossava T" first="T." last="Alatossava">T. Alatossava</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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